PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574926.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRF
Protein Properties Length: 350aa    MW: 40180 Da    PI: 7.536
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574926.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.42.8e-2478121144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  XP_012574926.1  78 DPEPGRCRRTDGKKWRCSKEAYQDSKYCERHMHRGKNRSRKPVE 121
                     79***************************************987 PP
2QLQ55.41.8e-19741236
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                    +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  XP_012574926.1  7 PFTPSQWQELEHQALVYKYMASGISIPPDLLFTIR 41
                    8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.5E-11642IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.9E-14741IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.953742IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.55878122IPR014977WRC domain
PfamPF088793.1E-2079121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MNKNRFPFTP SQWQELEHQA LVYKYMASGI SIPPDLLFTI RRSFFDSPLI SSTLLPNQTQ  60
QQHFGWNYLQ MGIGRKIDPE PGRCRRTDGK KWRCSKEAYQ DSKYCERHMH RGKNRSRKPV  120
EVFKTTTTNA NANANANANN PSTLTSNNSS LSFDTQQHHH HSHLQHSFLY HHPSSKSSSS  180
TAIVLSSYED NSAPLFLDTN SCSHNNTDYR YVYGEKEDVD EYAFFKEPSG SSTMKSFSTS  240
SMDRDSWQLT PLTMSSSSSS SSSRLRSFSS LSNDYSCLQL QSLSEQSKQQ EQEKEPQKTV  300
HRFFDEWPHK GREQWLHDLD DKSSTTQLSI SIPSSAHDFP TFTSSTHHDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574926.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098461e-58AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513476.10.0growth-regulating factor 1
TrEMBLA0A1S2Z1T80.0A0A1S2Z1T8_CICAR; growth-regulating factor 1
STRINGXP_004513476.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-51growth-regulating factor 5