PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012575056.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family STAT
Protein Properties Length: 712aa    MW: 80317.6 Da    PI: 6.6734
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012575056.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT186.43.4e-582223441122
            STAT   1 ldvvllnalgqpvekdve.vvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk 94 
                     ldvvl++a+gqpv+k+ e v asL+yad+g++ve+++d+eapLL sydG+efss +rp+kll Grasfkl+isqLsskcdnrLf i+f++pkl +
  XP_012575056.1 222 LDVVLSDAFGQPVDKENEqVFASLVYADTGAPVENTSDDEAPLLSSYDGIEFSSRERPSKLLLGRASFKLRISQLSSKCDNRLFLIRFCVPKLGN 316
                     8**************975499************************************************************************** PP

            STAT  95 ypfleavskpirCisrsrntrsssltkk 122
                     ypfl++ + pirCisrsrntr s+l++k
  XP_012575056.1 317 YPFLQTNTCPIRCISRSRNTRLSTLVWK 344
                     *********************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF133852.5E-69172No hitNo description
Gene3DG3DSA:2.60.120.2008.9E-625172IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498996.33E-825172IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.104.8E-6601646IPR000980SH2 domain
SuperFamilySSF555506.94E-8603686IPR000980SH2 domain
PROSITE profilePS500019.589609666IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MGSDAMGREG YRTLKDLRLE IEGKEGTFSI CFWVYLMNST TFPAIILHQV HSDISQSAPF  60
LIINENKRVN ILPVLFLHEE APDTGSINSW TEVPHATVDF EFSLEKWVHV GCEVCPNNIR  120
LQINGEIVAK KSLSSLLNKE SNSSDLKKIT LANVGGNGNN VQGYVHNFEV FHNVSFIKDH  180
HLKDPPLKLS IDESAASEVE EESGGIWGIV GGKASCRRNF SLDVVLSDAF GQPVDKENEQ  240
VFASLVYADT GAPVENTSDD EAPLLSSYDG IEFSSRERPS KLLLGRASFK LRISQLSSKC  300
DNRLFLIRFC VPKLGNYPFL QTNTCPIRCI SRSRNTRLST LVWKRSTYAL QRLNLSQSSA  360
MDDRSLEHTH SGHEEKTNPL MKRFRVGLDK ISVSVNADST KKQSGVECNS HVENGFPRSL  420
DGRSLNFEED AYPSESESIG ERNSPSNSMG SRRYPISDIT IFKYCLAGLT ERSLMLKEIA  480
TSSSDREISE LAHQVSHYSG CSHHGNQILS AKRLIEDGTN LWRAMSANNH HVPWESAVYE  540
IEEQFMKIAS CGSRSFSHQD LEILRRIAGC QEYLTQENFE KLWCWLYPVA CIISRDWVNP  600
IWNSTSPKWI EGFITKEEAE ASLQGPAGFQ EPGTFILRFP TSRSWPHPDA GSLIVTYIGK  660
DYKLRHRLLS MDHIYGSDRR IDVKPLQDML LAEPELSRLG RTMRSYKAHL QH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012575056.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012575056.10.0SH2 domain-containing protein A-like isoform X3
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLA0A1S3EJD10.0A0A1S3EJD1_CICAR; SH2 domain-containing protein A-like isoform X3
STRINGXP_004513787.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]