PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012575102.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 257aa MW: 28271.7 Da PI: 7.1087

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012575102.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.0004	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H XP_012575102.1 100 FSCNYCKRKFFSSQALGGHQNAH 122 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.98E-6	98	127	No hit	No description
PROSITE profile	PS50157	11.323	100	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MMIPNLNLEA ENSLEVSSQV GSNLYLQETS HDLTKDSATT SSCLTNLTKP DIDPGPVSLD 60 LTLNFINPSD EDSKETSDTN SETKAEAHAA NSALRVHRIF SCNYCKRKFF SSQALGGHQN 120 AHKRERTVAK RAMRIGMFTE RYTSLASLPL HGSSFQSLGI IEAHAAMHQK QMQSSSSMKA 180 PAAKFEKECF GAASMLMHND HDVGIFWPGS FRQIDENAGI NLRYQNAHSS NLNTIFVAKS 240 PLPPPQTSTS PDLTLRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012575102.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012575102.1	0.0	zinc finger protein 4-like
TrEMBL	A0A1S3EGY8	0.0	A0A1S3EGY8_CICAR; zinc finger protein 4-like
STRING	XP_004513911.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	4e-28	zinc finger protein 4