PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012575345.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 149aa    MW: 17277.7 Da    PI: 9.9222
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012575345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.56e-4151321128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 
                     lppG++F Ptd el+++yL++k++++++ +   i +vd+y+  P++L  +  +++e+++yfF+kr++ky++g+r+ r +   g+Wkatg d+++ 
  XP_012575345.1   5 LPPGYKFLPTDVELIKYYLQPKIANHHIIA-GPIYDVDVYQNSPNNLYaMYKREGEQHTYFFTKRNRKYPKGERPDRgVRGFGFWKATGIDHPIN 98 
                     79*************************888.88**************833444466789******************77779************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +g+ +g kktLvfy+g+ + g kt+W+m+ey++
  XP_012575345.1  99 D-NGTIIGFKKTLVFYRGNPKGGDKTNWIMQEYTI 132
                     9.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-443136IPR003441NAC domain
PROSITE profilePS5100542.1385149IPR003441NAC domain
PfamPF023659.6E-226132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MLQLLPPGYK FLPTDVELIK YYLQPKIANH HIIAGPIYDV DVYQNSPNNL YAMYKREGEQ  60
HTYFFTKRNR KYPKGERPDR GVRGFGFWKA TGIDHPINDN GTIIGFKKTL VFYRGNPKGG  120
DKTNWIMQEY TINIENIEST STTPTSKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-32513215140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012575345.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513361.21e-105NAC domain-containing protein 41-like
TrEMBLA0A1S2Z1L11e-103A0A1S2Z1L1_CICAR; NAC domain-containing protein 41-like
STRINGXP_004514441.13e-98(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1730657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-36NAC family protein