PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012575346.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 216aa MW: 24381.2 Da PI: 5.3642

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012575346.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	79.8	5.7e-25	5	80	53	128
NAM 53 aeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e+++yfF+kr++ky++g+r+ r + g+Wkatg d+++ + +g+ +g kktLvfy+g+ + g kt+W+m+ey++ XP_012575346.1 5 EGEQHTYFFTKRNRKYPKGERPDRgVRGFGFWKATGIDHPIND-NGTIIGFKKTLVFYRGNPKGGDKTNWIMQEYTI 80 467799****************77779*********9.999**************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	32.488	1	107	IPR003441	NAC domain
SuperFamily	SSF101941	3.92E-28	4	105	IPR003441	NAC domain
Pfam	PF02365	2.0E-10	10	80	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MYKREGEQHT YFFTKRNRKY PKGERPDRGV RGFGFWKATG IDHPINDNGT IIGFKKTLVF 60 YRGNPKGGDK TNWIMQEYTI NIENIESTST TPTSQLNNWV ICKIYEHKRG DAIGKAKKRK 120 HENENLEGEN MEEVIPTPNS SPSTPLTPTA TSPPLSPSTP PTPAATSPPP PLLPEMSSND 180 IDMANFQNGD YDISSILNFD QNLENEMFDI DQLLDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-26	6	108	69	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-26	6	108	69	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-26	6	108	69	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-26	6	108	69	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-26	6	108	72	169	NAC domain-containing protein 19
3swm_B	1e-26	6	108	72	169	NAC domain-containing protein 19
3swm_C	1e-26	6	108	72	169	NAC domain-containing protein 19
3swm_D	1e-26	6	108	72	169	NAC domain-containing protein 19
3swp_A	1e-26	6	108	72	169	NAC domain-containing protein 19
3swp_B	1e-26	6	108	72	169	NAC domain-containing protein 19
3swp_C	1e-26	6	108	72	169	NAC domain-containing protein 19
3swp_D	1e-26	6	108	72	169	NAC domain-containing protein 19
4dul_A	1e-26	6	108	69	166	NAC domain-containing protein 19
4dul_B	1e-26	6	108	69	166	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012575346.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012575346.1	1e-160	NAC domain-containing protein 1-like
TrEMBL	A0A1S3EK77	1e-159	A0A1S3EK77_CICAR; NAC domain-containing protein 1-like
STRING	XP_004514442.1	1e-159	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17306	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	7e-29	NAC family protein