PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013583657.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 344aa    MW: 39500.9 Da    PI: 5.9198
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013583657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.91e-49101521129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee...........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                     lppGfrFhP+deelv++yL+kk+++k          +            + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+nrat 
  XP_013583657.1  10 LPPGFRFHPSDEELVCHYLCKKIRAKYdqgdvE---DddtdealngatDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRTNRATI 101
                     79**********************999665540...145666777764699*************87788999*********************** PP

             NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  XP_013583657.1 102 SGYWKATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                     ***************967888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-568170IPR003441NAC domain
PROSITE profilePS5100554.02110170IPR003441NAC domain
PfamPF023651.3E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGLKDIGSRL PPGFRFHPSD EELVCHYLCK KIRAKYDQGD VEDDDTDEAL NGATDLVEID  60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTS  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDSTLRDNN  180
NEHQTQRFEV NDAPDLNYNN QSQPLLSSPP STTIDPPHHH DQWEQLMKQP SRSTDHPYHH  240
NCQHQTVACG WEQMMIGSMS SSSSHGPDHE SLLNLLYADN NNSVNITDDN YGHNYGKILL  300
SSDITSLDHD KTCMASSSDG GMVSDLHMEC RGLSFETENL LPFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-451017017165NO APICAL MERISTEM PROTEIN
1ut4_B3e-451017017165NO APICAL MERISTEM PROTEIN
1ut7_A3e-451017017165NO APICAL MERISTEM PROTEIN
1ut7_B3e-451017017165NO APICAL MERISTEM PROTEIN
3swm_A4e-451017020168NAC domain-containing protein 19
3swm_B4e-451017020168NAC domain-containing protein 19
3swm_C4e-451017020168NAC domain-containing protein 19
3swm_D4e-451017020168NAC domain-containing protein 19
3swp_A4e-451017020168NAC domain-containing protein 19
3swp_B4e-451017020168NAC domain-containing protein 19
3swp_C4e-451017020168NAC domain-containing protein 19
3swp_D4e-451017020168NAC domain-containing protein 19
4dul_A3e-451017017165NAC domain-containing protein 19
4dul_B3e-451017017165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013583657.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382730.0KF738273.1 Brassica napus NAC transcription factor 74-1 (NAC74-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583657.10.0PREDICTED: NAC domain-containing protein 21/22
SwissprotQ84TE67e-59NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0D3A3R60.0A0A0D3A3R6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G3290.0A0A3P6G329_BRAOL; Uncharacterized protein
STRINGBo1g017380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]