PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013583680.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 319aa MW: 35478.1 Da PI: 9.3269

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013583680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	24.5	7.7e-08	28	86	5	66
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaas 66 + +C +CGn a+ C ++ C+ CC + C hv v++a + + +s+++a++ XP_013583680.1 28 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLKGVVTSAEKTAP---STPSSEQKASE 86 568********************************9988887766543...22222223332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.5E-5	30	76	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MATSSPSLSN NGFSAAVTPP KTLRGLNKPK CIQCGNVARS RCPFQSCKGC CSRAENPCPI 60 HVLKGVVTSA EKTAPSTPSS EQKASEGTPG RVSSIRQLSS NFAQFNNLNA VSRQRKPLTI 120 KDAQALNEWR FTKLKEYRNR NIEVENDAFD RYMINVNLLE EAFSLASVPE EEETAASERN 180 NEERTVSELK LRLRSNSATA EGFKMRITET VKAGLVKVQK PGGKSDDQDY IKRRIKSRRL 240 EEKTSALNEI IDKLNKARTE EDLKSCVEMR SKLCGNVSSS SASDKNRIFP PSVHKVEISE 300 EALQKMGEQL QSFDQVETL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013583680.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013583680.1	0.0	PREDICTED: uncharacterized protein LOC106292608
Refseq	XP_022571349.1	0.0	uncharacterized protein LOC111213789
TrEMBL	A0A0D3CDT2	0.0	A0A0D3CDT2_BRAOL; Uncharacterized protein
STRING	Bo5g049290.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7362	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	0.0