PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013583694.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 233aa    MW: 26457.8 Da    PI: 7.553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013583694.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.5e-091156447
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     WT+eE + + +a + ++ +   +W +Ia++++ g+t  ++   ++k+
   XP_013583694.1 11 WTKEENKMFERALAIYPEDspdRWFKIASMIP-GKTVFDVMKQYNKL 56
                     ********************************.**********9997 PP
2Myb_DNA-binding40.28.1e-13103147347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
   XP_013583694.1 103 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 147
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.179661IPR017884SANT domain
SMARTSM007171.5E-9759IPR001005SANT/Myb domain
SuperFamilySSF466894.62E-13964IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-41056IPR009057Homeodomain-like
PfamPF002491.5E-71156IPR001005SANT/Myb domain
CDDcd001671.22E-91156No hitNo description
PROSITE profilePS5129419.43996152IPR017930Myb domain
SuperFamilySSF466891.93E-1598151IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1799151IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.2E-11100152IPR009057Homeodomain-like
SMARTSM007171.7E-10100150IPR001005SANT/Myb domain
PfamPF002493.5E-10103147IPR001005SANT/Myb domain
CDDcd001673.72E-9103147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MMSLQSPSSI WTKEENKMFE RALAIYPEDS PDRWFKIASM IPGKTVFDVM KQYNKLEEDV  60
FDIEEGRVPI PGYPSPLGFA QDTCRKRPNG ARGSDHDRKK GVPWTEEEHR RFLLGLLKYG  120
KGDWRNISRN FVVSKTPTQV ASHAQKYYQR QLSGAKDKRR PSIHDITTGN LLNANLNRSF  180
SDHRDILLDL GFIENDNAEE GLMCMSQNPF CPSSAPFDAA FNFAGVNAYS DGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-16178178RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013583694.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0561800.0AY056180.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBankAY0912650.0AY091265.1 Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds.
GenBankAY5503080.0AY550308.1 Arabidopsis thaliana MYB transcription factor (At3g11280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583693.11e-177PREDICTED: transcription factor DIVARICATA isoform X1
RefseqXP_013583694.11e-177PREDICTED: transcription factor DIVARICATA isoform X2
SwissprotQ8S9H76e-69DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D3CL821e-175A0A0D3CL82_BRAOL; Uncharacterized protein
STRINGBo5g136680.11e-176(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-143MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]