PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013583896.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 214aa MW: 24499.1 Da PI: 10.1043

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013583896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.8	1e-29	43	131	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk++GF +r+++ ++s r+g++++r++vC+keg+r+++ ++ +++r++ra tr gCka ++vkk+k+gkw vtk+++eHnH+l XP_013583896.1 43 SFYDSYAKSTGFVMRVDAFRRSMRDGTVVWRKLVCNKEGFRRSRPRR-SESRKPRAITREGCKALIVVKKDKSGKWIVTKFVKEHNHPLL 131 5******************************************99.9*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-28	43	131	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MEGNLLRGKD VVETMENIVT EEASSVVEPF IGMEFESEEA AKSFYDSYAK STGFVMRVDA 60 FRRSMRDGTV VWRKLVCNKE GFRRSRPRRS ESRKPRAITR EGCKALIVVK KDKSGKWIVT 120 KFVKEHNHPL LSLLANARRS SHISQSPDEK DAKIRELSTE LSRERKRCAA LQQQLDMVLN 180 VMEEHANHLS VNINNVIQSV KEIESITFTK SLIS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013583896.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013583896.1	1e-157	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_013696015.1	1e-157	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	3e-29	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3P6FXQ4	1e-154	A0A3P6FXQ4_BRAOL; Uncharacterized protein
STRING	Bo5g141470.1	1e-145	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-104	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]