PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013584006.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 237aa MW: 27616.5 Da PI: 7.6349

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013584006.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.3	4.7e-30	158	213	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++WtpeLH+ Fv+a++qLGG+ +A+Pk+i+e+m+ ++Lt+++vkSHLQkYRl+ XP_013584006.1 158 KQRRCWTPELHRLFVDALQQLGGPGVAIPKQIREHMQEESLTNDEVKSHLQKYRLH 213 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.58	155	215	IPR017930	Myb domain
SuperFamily	SSF46689	1.25E-17	156	216	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.2E-26	157	216	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-25	158	213	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	160	211	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MNVAVEKGCK LEEHVKKLEE EKRKIQGSEL ELPLCLQILN DAISYLKKET ETDTQPLLKD 60 FISLSKPIRE EHDEEGEELF KEKKFQLWRE NDHISNARFS DTKIKNTLEI ERDEEKSSNS 120 LYMLLSPGMT TPKGRRKLVA SSFVPQPPPY LQQQALRKQR RCWTPELHRL FVDALQQLGG 180 PGVAIPKQIR EHMQEESLTN DEVKSHLQKY RLHIRKSDSN LEKQSVVVLG FNLWNSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013584006.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221631	3e-70	AK221631.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-96-G04.
GenBank	AY086694	3e-70	AY086694.1 Arabidopsis thaliana clone 2686 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584006.1	1e-174	PREDICTED: two-component response regulator ARR2
Swissprot	Q9FX84	5e-93	HHO6_ARATH; Transcription factor HHO6
TrEMBL	A0A078J5W2	1e-173	A0A078J5W2_BRANA; BnaC05g51600D protein
STRING	Bo5g076300.1	1e-174	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13927	18	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49560.1	2e-73	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]