PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584138.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 207aa    MW: 23752.6 Da    PI: 4.8035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.35.8e-162979155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    + y+G+r++    +Wv+e+r+p        +r++lg++ tae+Aa+a++ a+ +l+g
  XP_013584138.1 29 PVYRGIRRRN-GDKWVCEVREP-----IhqRRIWLGTYPTAEMAARAHDVAAYALRG 79
                    68*****877.9******9997.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-112979IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-203089IPR016177DNA-binding domain
PROSITE profilePS5103221.9573087IPR001471AP2/ERF domain
SMARTSM003802.1E-233093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-293089IPR001471AP2/ERF domain
PRINTSPR003671.3E-73142IPR001471AP2/ERF domain
CDDcd000182.33E-263189No hitNo description
PRINTSPR003671.3E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDNNDEIMLA EMTPKRRAGR RVFKETRHPV YRGIRRRNGD KWVCEVREPI HQRRIWLGTY  60
PTAEMAARAH DVAAYALRGR SACLNFADSA WRLPVPESTD PDVIRRVAAE AAEMFRPTEY  120
ESGITVLPSY GDEVDLAFGS GSGSGSEERN LHGYVEQEEE EVSTTMMRLA TEPLMSPPRS  180
YMEGMTSNTY MEEDMSYQDM SLWSYNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-141786371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00001PBMTransfer from 471409Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584138.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0135950.0KJ013595.1 Brassica rapa subsp. chinensis CBF6B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584138.11e-153PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotQ9LN861e-113DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A078J1I81e-152A0A078J1I8_BRANA; BnaCnng31550D protein
TrEMBLA0A0D3C9L11e-152A0A0D3C9L1_BRAOL; Uncharacterized protein
STRINGBo5g016750.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-115ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]