PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013584379.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 264aa MW: 28090.2 Da PI: 5.3512

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013584379.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.3e-05	150	190	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_013584379.1 150 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 190 678889999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.668	140	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-11	142	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.32E-4	148	194	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-7	148	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MGDTADDQAM VEAPGVPSFS ELLMLSDGFL SSSEDHRREI NGGDGGEDSF GFVFSGTNGS 60 KMLCFSGDCQ NGDESLFQEP SFPSGVSVSD PSSCTINTCK NSNDTCADER SIKSSNKRTG 120 SGNGQNMDHN QKPSKKCKKN QDKSTVGIAK VRKERLGERI AALQQLVSPY GKTDAASVLH 180 EAMGYIKFLQ DQIQVLCSPY LINYSLDGGA VTGDVTPGKK VRDLRSRGLC LAPVSSTVHV 240 ENSNGADLWS PATASMGHTM SPSQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013584379.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584379.1	0.0	PREDICTED: transcription factor bHLH113 isoform X2
Swissprot	Q9LT67	1e-138	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A0D3CIF8	0.0	A0A0D3CIF8_BRAOL; Uncharacterized protein
STRING	Bo5g114070.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-140	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]