PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584398.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 251aa    MW: 28572 Da    PI: 9.9017
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-2090149357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eq+++Le l++   r+p+ae++e+ +++l    +++ ++V++WFqN++a+e++
  XP_013584398.1  90 TRWNPTQEQIRILEVLYKGgMRTPNAEQIEHVTSQLgeygKIEGKNVFYWFQNHKARERQ 149
                     7*****************99**************************************97 PP
2Wus_type_Homeobox115.52.5e-3790151465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        tRW+Pt+eQi+iLe lyk G+rtPn+e+i+++t++L eyGkie+kNVfyWFQN+kaRerqkq
     XP_013584398.1  90 TRWNPTQEQIRILEVLYKGGMRTPNAEQIEHVTSQLGEYGKIEGKNVFYWFQNHKARERQKQ 151
                        8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.92885150IPR001356Homeobox domain
SuperFamilySSF466894.23E-1286154IPR009057Homeodomain-like
SMARTSM003892.1E-687154IPR001356Homeobox domain
CDDcd000863.50E-490151No hitNo description
PfamPF000465.9E-1890149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-791149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MKVHEFSNGF SSWEQQQESP SSLSCKRFRP LAPRLSGSPS SPPSSSSGVT SATFDLKSFI  60
KPYQAAPTKS HYSLEHKRDF SQVEMHPGGT RWNPTQEQIR ILEVLYKGGM RTPNAEQIEH  120
VTSQLGEYGK IEGKNVFYWF QNHKARERQK QKRNNLSLSC QGSLSTTSVS NASVTMTTRT  180
SSSPDFKREP MVMKELLEEN EYKRTCRSWG FENLKIESRR NINSSINATI ATTFNIDNVT  240
LELFPLHPEG R
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584398.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584398.10.0PREDICTED: WUSCHEL-related homeobox 4-like
SwissprotQ6X7J91e-119WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A3P6EJW50.0A0A3P6EJW5_BRAOL; Uncharacterized protein
STRINGBra032212.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59802747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-115WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]