PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013584499.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 290aa MW: 32835.4 Da PI: 7.0614

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013584499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.2	9.4e-06	175	211	14	55
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ +++ L +++P+ kK+s a++Le++ +YI Lq XP_013584499.1 175 RKVSDRIRSLEKIMPWE-----KKMSLATTLEETNKYITFLQ 211 6899**********9.....8**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.55	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-6	176	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-4	176	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MESCYEFASL SELPPLPQAY APMEEYYPYD IAPLESLPPF PHSDFAPHGG LIPFSDTHQD 60 YLQLQKQQHC AESMFTDSSL PLVTRDYLTE STRFENLFSH DVPFLHLPDL KFVEGARSPP 120 PCLSLAPPPP LPVARHNVNL RQRHVGSRVN NTFSISPSSS SKSKPPASQY VHGTRKVSDR 180 IRSLEKIMPW EKKMSLATTL EETNKYITFL QSQIASLRWM PLDSVYPTKP REEHVGETTS 240 LLNSLTRQQL LQVIANSPGS RNVLYKQGVC VFSYEQLLSV KMMAESARNL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013584499.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584499.1	0.0	PREDICTED: transcription factor bHLH117-like
Swissprot	Q9LRJ4	1e-64	BH117_ARATH; Transcription factor bHLH117
TrEMBL	A0A0D3CHD2	0.0	A0A0D3CHD2_BRAOL; Uncharacterized protein
STRING	Bo5g098430.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13399	22	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	1e-61	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]