PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584612.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 401aa    MW: 46222 Da    PI: 6.0447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12216258754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er+RR+riN+++  Lr ++P+      +K++K  +L  Av+YI++L
  XP_013584612.1 216 HSERKRRERINQRIYALRAVVPNV-----TKMNKNGTLSDAVDYINQL 258
                     57*********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-1512155IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000837.81E-12207263No hitNo description
SuperFamilySSF474591.7E-15207271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.574209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-13215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10216258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13216272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MMMMRGGERV KEFLRPFVDS REWDFCVIWK LGDDPSTRFI EWVGCCCSGS YIDKNIKHEH  60
VEEETQNTSS ICRDEDNKHH IRSLACEALS RFPLFMPLYP GIHGEVVMSK SPKWLVNSGP  120
GSKQDIFSTR VLVPVRDGLV ELFSFIMKPV DESMVDLIIS HCNTFFEPYP EQTLPFRIIS  180
KAEESMLMHK EEDVVMQNAI DDKKVAKENF KSKNLHSERK RRERINQRIY ALRAVVPNVT  240
KMNKNGTLSD AVDYINQLLV EKQKLEDELR GINEIESRRI AAEEESAIAN PQAEKVASRL  300
NKIVNSEVNL EVHETGERGF LIRIAQEHKQ DGFIRLIETV DSCGLEIIDV NFTRLDLRVM  360
TVLNVKATKD GTTPENLRDL LIKMMMRTSE NPNAESLRQY T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERKRRE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584612.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584612.10.0PREDICTED: transcription factor bHLH90 isoform X1
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLA0A0D3C9460.0A0A0D3C946_BRAOL; Uncharacterized protein
STRINGBo5g012130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein