PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013584765.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 176aa MW: 20391.7 Da PI: 9.8641

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013584765.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	97	120	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C ksF+ L +H t H XP_013584765.1 97 WKCGYCRKSFNEDKFLDQHFATrH 120 58**********999999988877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	99	120	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MITPSDVPSR WRKKSPNGFR CRLRLFSCSM GRLKESSPVI LLLLLFPLLL HQSLTKYLTP 60 FVERERYQIP DKCRLHPDND LYRDQEQHKV HVDVYEWKCG YCRKSFNEDK FLDQHFATRH 120 FNLLNTTGTK CLADLCGALH CDFVLSSKKA KSKCNPAAAA KNRVISARVL LIHASQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013584765.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189320	9e-70	AC189320.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584765.1	1e-129	PREDICTED: uncharacterized protein LOC106293642
TrEMBL	A0A0D3CJU8	1e-106	A0A0D3CJU8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F2X2	1e-106	A0A3P6F2X2_BRAOL; Uncharacterized protein
STRING	Bo5g126890.1	1e-106	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-68	C2H2-like zinc finger protein