PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013584847.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 261aa MW: 29750.9 Da PI: 8.4913

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013584847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.7e-14	73	125	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r++h e+Er+RR+++ s f Lr +lP ++K s ++ + +Av+YIk+L+ XP_013584847.1 73 KRAKHREIERQRRQEVTSLFKHLRYILPAqY---VKGKRSSSDHVNEAVNYIKDLE 125 79*************************66...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.72E-10	70	129	No hit	No description
SuperFamily	SSF47459	1.57E-14	70	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.522	72	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-12	73	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-11	73	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0061	78	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MAFPSSSSFT NDFAYENELD FSSLLTPSTF ISFQDPNPSN PIIHNTENGG RQRIRETTVT 60 DETPREDVEP KNKRAKHREI ERQRRQEVTS LFKHLRYILP AQYVKGKRSS SDHVNEAVNY 120 IKDLEKKIKE VSKKRDRIKR SITHPPSAGY CPIRSLAASC SSPSSLSSYC SCVGDTHIDF 180 KVMTCLVGIE VVASCCFRHE SCLSSVLQLL VHEQCFNVVS CISTRLHLRF IHTIVCEVEK 240 GIEINFSELQ EKIIKMGRHR A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	84	KRAKHREIERQRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013584847.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584847.1	0.0	PREDICTED: transcription factor bHLH55-like
Refseq	XP_022559613.1	0.0	transcription factor bHLH55-like
Swissprot	Q9LN95	1e-123	BH055_ARATH; Transcription factor bHLH55
TrEMBL	A0A078JTU3	0.0	A0A078JTU3_BRANA; BnaCnng60760D protein
TrEMBL	A0A0D3C9L6	0.0	A0A0D3C9L6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F4P8	0.0	A0A3P6F4P8_BRAOL; Uncharacterized protein
STRING	Bo5g016800.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6228	18	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12540.1	1e-118	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Wisman E, et al. Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes. Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7 [PMID:9770503]