PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013584927.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 573aa MW: 62674.9 Da PI: 8.2589

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013584927.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50	5.7e-16	294	332	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCk+skClk+YCeCfaag++C C+C dC+Nk XP_013584927.1 294 SCKRCNCKRSKCLKLYCECFAAGVYCIGPCSCVDCFNKP 332 689**********************************96 PP
2	TCR	52.4	1e-16	380	418	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+CkN XP_013584927.1 380 RHKRGCNCKKSNCLKKYCECYQSGVGCSINCRCEGCKNA 418 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.3E-18	293	334	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.385	294	420	IPR005172	CRC domain
Pfam	PF03638	9.8E-12	296	331	IPR005172	CRC domain
SMART	SM01114	4.2E-17	380	421	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.2E-12	382	418	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MDTPPKNVTQ MENPISKLKL ENSPVFNYIN SLSPIKPVRS LPIAQTFGSL SYSSPPSVFT 60 SPHVSSHKGS RFKSDHNHVP TSVGEDEALR ETEPPQILQN ECTTDLLKMC DGNVKQKSET 120 PDWDAMISDS SDILILDSVN DSEASRCFLE RPSDSKTRSL GVAKSTLEPL MNIDDALHRG 180 VRRRCLGFEQ TPVASSSRCA VPSIGLHFNT IAMSSNDNNV GNEYSLSGNI KVGLQSSITS 240 VLNSQDNVGV SETGEDAGQG VEEGPKSLAL VELNQSSPKK KRRKFGQAGE GESSCKRCNC 300 KRSKCLKLYC ECFAAGVYCI GPCSCVDCFN KPIHEDTVMA TRKQIESRNP LAFAPKVIGN 360 SDSIMEVGDD AKSKTPASAR HKRGCNCKKS NCLKKYCECY QSGVGCSINC RCEGCKNAFG 420 RKDVSAGSSF TSMDKENETS SRGRTEKQPS TPMPLRQPLA QLPISSNNML LTHQHLHGAS 480 GSSLHMSQSF RRQDMSLMSH SKIEIITEER RADNIENLIE SPMTNMINAL SPNSKRLSLP 540 HVVGSSELSP WRRNGGRKLL LSIPTFPSLT PHH

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MDTPPKNVTQ MENPISKLKL ENSPVFNYIN SLSPIKPVRS LPIAQTFGSL SYSSPPSVFT  60
SPHVSSHKGS RFKSDHNHVP TSVGEDEALR ETEPPQILQN ECTTDLLKMC DGNVKQKSET  120
PDWDAMISDS SDILILDSVN DSEASRCFLE RPSDSKTRSL GVAKSTLEPL MNIDDALHRG  180
VRRRCLGFEQ TPVASSSRCA VPSIGLHFNT IAMSSNDNNV GNEYSLSGNI KVGLQSSITS  240
VLNSQDNVGV SETGEDAGQG VEEGPKSLAL VELNQSSPKK KRRKFGQAGE GESSCKRCNC  300
KRSKCLKLYC ECFAAGVYCI GPCSCVDCFN KPIHEDTVMA TRKQIESRNP LAFAPKVIGN  360
SDSIMEVGDD AKSKTPASAR HKRGCNCKKS NCLKKYCECY QSGVGCSINC RCEGCKNAFG  420
RKDVSAGSSF TSMDKENETS SRGRTEKQPS TPMPLRQPLA QLPISSNNML LTHQHLHGAS  480
GSSLHMSQSF RRQDMSLMSH SKIEIITEER RADNIENLIE SPMTNMINAL SPNSKRLSLP  540
HVVGSSELSP WRRNGGRKLL LSIPTFPSLT PHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-16	296	417	12	120	Protein lin-54 homolog
5fd3_B	1e-16	296	417	12	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	282	KKKRR
2	278	283	KKKRRK
3	279	283	KKRRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers and at significant levels in leaves. Detected with highest levels in developing ovules and microspores, and in petals. {ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013584927.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584927.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 3
Refseq	XP_013695714.1	0.0	protein tesmin/TSO1-like CXC 3
Swissprot	Q8L548	0.0	TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBL	A0A3P6EYZ9	0.0	A0A3P6EYZ9_BRAOL; Uncharacterized protein
STRING	Bo5g094510.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]