PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584952.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 133aa    MW: 14709 Da    PI: 8.8007
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.58.9e-201767255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++GVr+++ +g+++AeIrd ++ g   r++lg+f+tae+Aa+a+++a+ +++g
  XP_013584952.1 17 KFRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEDAARAYDRAAYSMRG 67
                    79*******.**********65443..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.5251775IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-231777IPR016177DNA-binding domain
SMARTSM003806.9E-351781IPR001471AP2/ERF domain
CDDcd000181.16E-171776No hitNo description
Gene3DG3DSA:3.30.730.101.0E-311777IPR001471AP2/ERF domain
PfamPF008475.6E-141767IPR001471AP2/ERF domain
PRINTSPR003672.8E-111829IPR001471AP2/ERF domain
PRINTSPR003672.8E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDQGGRSGGG GGAEQGKFRG VRRRPWGKYA AEIRDSRKHG ERVWLGTFDT AEDAARAYDR  60
AAYSMRGKAA ILNFPHEYNM GSGSSSNSAA TAANPSSSRQ VFEFEYLDDS VLEELLEYGE  120
NYNKNNVNMG KRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-5411111114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311GGRSGGGGG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584952.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains). Not affected by methyl jasmonate (MeJA), ethylene or salicylic acid (SA). {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324371e-134AC232437.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584952.16e-94PREDICTED: ethylene-responsive transcription factor 14
RefseqXP_013695096.16e-94ethylene-responsive transcription factor 14
SwissprotP938229e-58ERF97_ARATH; Ethylene-responsive transcription factor 14
TrEMBLA0A078FUV41e-92A0A078FUV4_BRANA; BnaC05g02480D protein
TrEMBLA0A0D3C7I31e-92A0A0D3C7I3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ENE91e-92A0A3P6ENE9_BRAOL; Uncharacterized protein
STRINGBo5g004520.12e-93(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.14e-37Ethylene-responsive element binding factor 14