PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585002.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 88aa    MW: 9832.04 Da    PI: 8.3755
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585002.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.72.9e-332279260
     ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                    ++vrY eC+kNhAa++Gg+avDGC+Efm+  g egt +al+CaACgCHRnFHRreve+e
  XP_013585002.1 22 SNVRYVECQKNHAANIGGYAVDGCREFMAR-GGEGTDDALTCAACGCHRNFHRREVETE 79
                    689**************************9.8899********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-33188IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.6E-302376IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.4E-272576IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.3622675IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048509Biological Processregulation of meristem development
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MKKRQVVIKQ RKISYTTTTS SSNVRYVECQ KNHAANIGGY AVDGCREFMA RGGEGTDDAL  60
TCAACGCHRN FHRREVETEV VCEYSPPN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots, stems and flowers, present in seedlings and leaves, and weakly observed in inflorescence and siliques. {ECO:0000269|PubMed:16412086, ECO:0000269|PubMed:18713354}.
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149365.19e-61PREDICTED: mini zinc finger protein 3-like
RefseqXP_013585002.19e-61PREDICTED: mini zinc finger protein 3-like
RefseqXP_013646701.19e-61mini zinc finger protein 3-like
RefseqXP_013715426.19e-61mini zinc finger protein 3-like
SwissprotQ2Q4938e-48MIF3_ARATH; Mini zinc finger protein 3
TrEMBLA0A078G3G42e-59A0A078G3G4_BRANA; BnaA06g13000D protein
TrEMBLA0A0D3CBC62e-59A0A0D3CBC6_BRAOL; Uncharacterized protein
TrEMBLA0A397YWZ12e-59A0A397YWZ1_BRACM; Uncharacterized protein
TrEMBLA0A3P6EZ612e-59A0A3P6EZ61_BRAOL; Uncharacterized protein
TrEMBLM4EA802e-59M4EA80_BRARP; Uncharacterized protein
STRINGBra025688.1-P3e-60(Brassica rapa)
STRINGBo5g025880.13e-60(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94428114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.13e-50mini zinc finger