PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585108.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 257aa    MW: 29490.9 Da    PI: 5.9601
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585108.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.43.3e-40311311101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am++++++++ara+dP++G++++i++lq ++e +k+el+
  XP_013585108.1  31 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKDLSPPEKDAAMHTIMFQSDARANDPIEGCYSIIRRLQYEIEYSKNELD 125
                     7********************************************************************************************** PP

          DUF260  96 llkeel 101
                     +++++l
  XP_013585108.1 126 MVHHQL 131
                     **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.11430131IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3631128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MPSNKPSSIF PLHHKPTPLK PSSSTNTTNQ ACAACKYQRR KCAPDCLLAP YFPHDRHRQF  60
LNAHKLFGVS NITKIIKDLS PPEKDAAMHT IMFQSDARAN DPIEGCYSII RRLQYEIEYS  120
KNELDMVHHQ LAVFRDRAHN HYQEPHMQMQ EPEDLSSSCD LNNNNVVPYS YPLHHVQEPN  180
QQQQQYCSSG NFNGLQEDMW CLQLQESSTT VNMKGGFIDE CEDVKPVEEI SNEFEHHDGF  240
VEDSKLDLPS AQFIVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-28221312111LOB family transfactor Ramosa2.1
5ly0_B2e-28221312111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585108.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373280.0AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585108.10.0PREDICTED: LOB domain-containing protein 22
RefseqXP_013728511.10.0LOB domain-containing protein 22
SwissprotQ9LRW11e-149LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A078J0750.0A0A078J075_BRANA; BnaCnng28570D protein
TrEMBLA0A0D3CKG30.0A0A0D3CKG3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ENV90.0A0A3P6ENV9_BRAOL; Uncharacterized protein
STRINGBo5g132010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64982645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-144LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]