PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585192.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 177aa    MW: 20499.1 Da    PI: 7.8935
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.41e-101233355
         G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                    +++m vkgLtl+h+kSHLQk+Rl
  XP_013585192.1  1 MRVMAVKGLTLYHLKSHLQKFRL 23
                    789*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-9124IPR009057Homeodomain-like
PfamPF143791.7E-1479119IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MRVMAVKGLT LYHLKSHLQK FRLGKQPHNE HSHGHSTNIR DTNRVVNRHR SITHAASMLD  60
LQRNVVFSTP HIIGRNMNEM QMEVKRRIEE EVEVERQVNQ RIEAQGKYME SMLEKACETQ  120
EASLTKDYST LFFNNTSPLP IPWFEDHFPS SSSMDSTLNL SDISLNFSLQ DSRSSIS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585192.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893351e-160AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585192.11e-130PREDICTED: myb family transcription factor APL isoform X3
SwissprotQ8VYI29e-97PHLC_ARATH; Myb family transcription factor PHL12
TrEMBLA0A078HZI91e-128A0A078HZI9_BRANA; BnaC05g40460D protein
TrEMBLA0A0D3CKT21e-128A0A0D3CKT2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FWD01e-128A0A3P6FWD0_BRAOL; Uncharacterized protein
STRINGBo5g133200.11e-129(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.18e-74G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]