PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585334.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 242aa    MW: 27714.6 Da    PI: 4.4231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585334.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.7e-193887255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y GVr+++ +gr++AeIr p++   + r++lg+++taeeAa a+++a+++++g
  XP_013585334.1 38 KYVGVRRRP-WGRYAAEIRNPTT---KERYWLGTYDTAEEAALAYDRAARSIRG 87
                    8********.**********965...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-283895IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-213896IPR016177DNA-binding domain
PROSITE profilePS5103221.2463895IPR001471AP2/ERF domain
PfamPF008472.0E-133887IPR001471AP2/ERF domain
SMARTSM003801.9E-3138101IPR001471AP2/ERF domain
CDDcd000187.27E-313894No hitNo description
PRINTSPR003671.4E-83950IPR001471AP2/ERF domain
PRINTSPR003671.4E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDFNGNSNAD SSSRSKKSNR KKQQQSQPQP QQYNEENKYV GVRRRPWGRY AAEIRNPTTK  60
ERYWLGTYDT AEEAALAYDR AARSIRGLTA KTNFVYSDMP RGSSVTSFIS PDESQRFISE  120
LFNHSFQPED PNNSTTNNLY SSTNTENQNA NEFSYNGWPH ESECDYQSIN TNDEHCDHEL  180
PPLPPRTCFG AELTYPETDS YWNVANTSMD YSFELDAFVD QNSPVESGTE GFDSSSSTFF  240
YQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1935941171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585334.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585334.10.0PREDICTED: ethylene-responsive transcription factor ERF087-like
SwissprotQ9FZ901e-122ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A0D3CE621e-180A0A0D3CE62_BRAOL; Uncharacterized protein
STRINGBo5g054550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129331529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-103ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]