PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013585394.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 251aa MW: 28749.2 Da PI: 7.7358

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013585394.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128	7.4e-40	4	132	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 p+G+rF Pt+ee+v++yL+ k +g + ++++vi++++i++++Pw+Lp + k+++++k wyfF +++k+y++g+r+ r+tksg+Wk+tg + ++ XP_013585394.1 4 PVGLRFLPTEEEIVDHYLRLKNHGGSntSHVDQVISTINICNFDPWELPrQsKMESKDKVWYFFGRKEKRYNRGERQIRKTKSGFWKKTGVTMDI 98 89*****************9998866677789**********95258888999********************************** PP NAM 93 lsk...kgelvglkktLvfykgrapkgektdWvmheyr 127 ++k ++e++g k++Lvf+ ++g+kt+W+mhey XP_013585394.1 99 KRKrsgHREKIGEKRVLVFH----SSGSKTNWIMHEYD 132 998888888*******....7999*******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.004	3	152	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-40	3	152	IPR003441	NAC domain
Pfam	PF02365	3.8E-22	4	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MVNPVGLRFL PTEEEIVDHY LRLKNHGGSN TSHVDQVIST INICNFDPWE LPRQSKMESK 60 DKVWYFFGRK EKRYNRGERQ IRKTKSGFWK KTGVTMDIKR KRSGHREKIG EKRVLVFHSS 120 GSKTNWIMHE YDAACLSPTQ NMTYTICKVH KKDEATEISS PGSDIDAHSL SLGTHMNNSG 180 GESSTAASEE PKNPHQLSVF FDKKQETELE EAIHGAFDNL SSYDWKYLLG DDEQSKTVSM 240 QNSLIGVFDW A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-25	4	157	18	170	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-25	4	157	18	170	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-25	4	157	18	170	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-25	4	157	18	170	NO APICAL MERISTEM PROTEIN
3swm_A	4e-25	4	157	21	173	NAC domain-containing protein 19
3swm_B	4e-25	4	157	21	173	NAC domain-containing protein 19
3swm_C	4e-25	4	157	21	173	NAC domain-containing protein 19
3swm_D	4e-25	4	157	21	173	NAC domain-containing protein 19
3swp_A	4e-25	4	157	21	173	NAC domain-containing protein 19
3swp_B	4e-25	4	157	21	173	NAC domain-containing protein 19
3swp_C	4e-25	4	157	21	173	NAC domain-containing protein 19
3swp_D	4e-25	4	157	21	173	NAC domain-containing protein 19
4dul_A	4e-25	4	157	18	170	NAC domain-containing protein 19
4dul_B	4e-25	4	157	18	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013585394.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013585394.1	0.0	PREDICTED: NAC domain-containing protein 5-like
Swissprot	O81914	8e-83	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	M4EWW4	1e-166	M4EWW4_BRARP; Uncharacterized protein
STRING	Bra033299.1-P	1e-167	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	4e-80	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]