PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585455.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-other
Protein Properties Length: 322aa    MW: 36022.8 Da    PI: 8.9897
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.62.8e-0534742555
                    --HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox 25 psaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    ps++  e+LA+k            ++ +q+ +WFqNrR+  
  XP_013585455.1 34 PSRHILEDLADKFsesverkgkiVVQFKQIWNWFQNRRYAL 74
                    7777777777777777777776678889**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0017781IPR001356Homeobox domain
SuperFamilySSF466894.71E-91278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-51379IPR009057Homeodomain-like
CDDcd000860.00161375No hitNo description
PfamPF167199.2E-40119246IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRPPSNGSP AFRFNMAEVM EMEGILLQHN IAMPSRHILE DLADKFSESV ERKGKIVVQF  60
KQIWNWFQNR RYALRARGNK APGKLNVSSS MPPGVDSTNQ MRNVLSVPGV MRSDSYKSYL  120
EFEAKSARDG AWYDVHNFLA HRNLETGDPE VQVRFAGFEV GEDEWIKVKK HIRLRSHPCE  180
ASECVAVLAG DLVLCFQEGK DQALYFDAKV LDAQRRRHDI RGCRCRFLVR YSHDQSEEIV  240
PLRKICRRPE TDYRLQQLHS SSNDFGKSNQ LQKPAPDAAA APQSSASVPI VVPEKKDPSL  300
ISASATSVQP GSNAATVPAG SA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-451202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-451202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-451202504134SHH1 SAWADEE
4iur_B3e-451202504134SHH1 SAWADEE
4iut_A3e-451202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-451202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-451202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-451202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-451202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-451202504134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.109652e-99leaf
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585455.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0930421e-174AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
GenBankBT0034281e-174BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585455.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0D3CIW90.0A0A0D3CIW9_BRAOL; Uncharacterized protein
STRINGBo5g118650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-167sequence-specific DNA binding transcription factors;sequence-specific DNA binding