PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585676.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 844aa    MW: 95609.5 Da    PI: 6.5657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.2e-14853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
   XP_013585676.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding34.45.1e-1160103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k+l++  W+tIa  +g  Rt+ qc +r+ k+l
   XP_013585676.1  60 TEWTREEDEKLLHLAKLLPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001671.48E-111053No hitNo description
PfamPF139214.2E-131070No hitNo description
SuperFamilySSF466898.27E-2133109IPR009057Homeodomain-like
CDDcd116594.00E-3055106No hitNo description
Gene3DG3DSA:1.10.10.605.7E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.67558107IPR017930Myb domain
SMARTSM007172.3E-1258105IPR001005SANT/Myb domain
PfamPF118314.5E-56407654IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYEAADDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIGNSHR KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT  240
TIEDLEGKRR ADVEAQLRKQ DVARNKIAER RDAPAAILQA NKLNDPEAVR KRSKLMLPPP  300
QISDHELEEI AKMGYASDLL AGNEEMTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG  360
KGDAIMMEAE NLARLRDSQT PLLGGDNPEL HPSDFTGVTP RKKEMLTPNP MLTPSMTPGG  420
ASLTPRIGLT PSREGSSFAM TPRGTPFRDE LHINEDMDMH ESAKLEKQRR EEARMSLRSG  480
LTGLPQPKNE YQIVAQPPPE ESEEPEEKIE EDMSDRIARE KAEEEARYQA LLRKRSKVLQ  540
RDLPRPPAAS LELIRNSLLS ANRDKSSVVP PSPVDDADEM VRKELLQLLE HDNAKYPLDE  600
KAEKKKGAKN RANSSGSQVT AIEDFEENEI QEADKMIKEE AQYLCAAMGN ESKTFDEFVV  660
AHDDCVKEIM YFPTRNAYGP SSVAVKAEKV AALQVEMENA KKKMEEDEKK AEHMKAKYKT  720
YTKGHEKRAE TVWSQIEASL KQIEIGGTEV ECFKALKRQE EMAASFRKKN LEEEVVKQKE  780
TERRLQARYG ELLSTLEKAE ELMVGFRAQA LKQADVVEDS LKQKEAKLAT GEEEVEAISM  840
EASA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027933792Cell division cycle 5-like protein
5xjc_L0.027933792Cell division cycle 5-like protein
5yzg_L0.027933792Cell division cycle 5-like protein
5z56_L0.027933792Cell division cycle 5-like protein
5z57_L0.027933792Cell division cycle 5-like protein
5z58_L0.027933792Cell division cycle 5-like protein
6ff4_L0.027933792Cell division cycle 5-like protein
6ff7_L0.027933792Cell division cycle 5-like protein
6icz_L0.027933792Cell division cycle 5-like protein
6id0_L0.027933792Cell division cycle 5-like protein
6id1_L0.027933792Cell division cycle 5-like protein
6qdv_O0.027933792Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIGNSHRKRKRK
2199204RKRKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585676.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585676.10.0PREDICTED: cell division cycle 5-like protein
RefseqXP_013696375.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A0D3C8U90.0A0A0D3C8U9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EQ900.0A0A3P6EQ90_BRAOL; Uncharacterized protein
STRINGBo5g010170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64532742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]