PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586024.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 576aa    MW: 64422.7 Da    PI: 4.7158
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.59.7e-1342065763374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + L++cA+a+s+g+ e+a +++++l++++s +gdp qR+aay++e+Laar+a s++ lykal+++e +   s+e+laa+++++ev+P++kf++l+
  XP_013586024.1 206 QILISCARALSQGKSEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYKALKCKEPP---SDERLAAMQVLFEVCPCFKFGFLA 297
                     78*****************************************************************9...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aN aI +++  e++vHiiDfdi+qG Q+++L+++ as p +g p+lR+Tgv++pes+  s   l+ +g rL+++A+  gv+fef++ va++++ +
  XP_013586024.1 298 ANDAIIDSIRDEKEVHIIDFDINQGNQYMTLIKTVASLPvKGRPRLRLTGVDDPESVqrSVGGLRIIGLRLEQLAKDHGVSFEFKA-VASKTNIV 391
                     ***************************************99**************9989999************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++ +L +kpgEal+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F+ rf+ea eyysa+fdsl+++lpres+er++
  XP_013586024.1 392 SPTTLGCKPGEALIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFMEAYEYYSAVFDSLDMTLPRESQERMN 486
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+p p+s ++++++++l+++ +   y+v+ee g+l ++W++++L+++SaWr
  XP_013586024.1 487 VERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFSPRPMSGRVTSNIQSLIKRDYCSKYKVKEEMGELHFCWEEKSLIVASAWR 576
                     *************************************************************666*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.233178556IPR005202Transcription factor GRAS
PfamPF035143.4E-131206576IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MSLVRSAELS AAAAAYRNPK LYSLNENGYN TGGGTSVEMF DPDRSKNTCL TDDSYPSQNY  60
EKYFLDSPTD EFAQQQHPVG SGGASVSSFG SLESFPYQSR PVLGCSMEYQ LPFDSTSTSS  120
MSLFGGYQVA TQSPSMEFDD EQMRSKIQEL ERALLDEEDD DDKMVGIDQL MEIDNEWSPK  180
ESSSEDSNSH ASSKEVISQA TTTPKQILIS CARALSQGKS EEALSMVNEL RQIVSIQGDP  240
SQRIAAYMVE GLAARMAASG KFLYKALKCK EPPSDERLAA MQVLFEVCPC FKFGFLAAND  300
AIIDSIRDEK EVHIIDFDIN QGNQYMTLIK TVASLPVKGR PRLRLTGVDD PESVQRSVGG  360
LRIIGLRLEQ LAKDHGVSFE FKAVASKTNI VSPTTLGCKP GEALIVNFAF QLHHMPDESV  420
TTVNQRDELL HMVKSLNPKL VTVVEQDVNT NTSPFFPRFM EAYEYYSAVF DSLDMTLPRE  480
SQERMNVERQ CLARDIVNIV ACEGEERIER YEVAGKWRAR MMMAGFSPRP MSGRVTSNIQ  540
SLIKRDYCSK YKVKEEMGEL HFCWEEKSLI VASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-582065766375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586024.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0D3CC300.0A0A0D3CC30_BRAOL; Uncharacterized protein
STRINGBo5g034360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]