PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586130.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 259aa    MW: 29553.6 Da    PI: 8.1041
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586130.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.6e-104885140
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     r +WT++E++++++a +++  + Wk+I + +g  +t  q+
   XP_013586130.1 48 RENWTEQEHDKFIEALHLFDRD-WKKIEAFVG-SKTVIQV 85
                     789*****************77.*********.9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.46E-103786IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-94686IPR006447Myb domain, plants
PROSITE profilePS512939.5514690IPR017884SANT domain
SMARTSM007171.6E-64795IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-54787IPR009057Homeodomain-like
PfamPF002493.0E-84885IPR001005SANT/Myb domain
CDDcd001676.70E-75087No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MNMNLPGFST TLPHSKTTMP VSARSHTMSF SEDPTKMIRK PYTITKSREN WTEQEHDKFI  60
EALHLFDRDW KKIEAFVGSK TVIQVQKNGT NEHLPPPRPK RKANHPYPQK ASKSVALTTS  120
NALLEHEYLY TTDPQPLIST PNQGLMRCNV ITPIPVIKEE LGVLENCCST SSSSSIRDQM  180
RTRTVTETDD QRVMPNFDEV YSFIGSVFDP KTTGHVQRLK QMDPINLETV LLLMKNLSVN  240
LSSPEFEEQR RLISSYNGE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9372116e-50AJ937211.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like3 (lcl3 gene).
GenBankAY5195086e-50AY519508.1 Arabidopsis thaliana MYB transcription factor (At1g01520) mRNA, complete cds.
GenBankBT0293476e-50BT029347.1 Arabidopsis thaliana At1g01520 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586130.10.0PREDICTED: protein REVEILLE 3 isoform X2
SwissprotQ6R0H01e-137RVE3_ARATH; Protein REVEILLE 3
TrEMBLA0A0D3C6X40.0A0A0D3C6X4_BRAOL; Uncharacterized protein
STRINGBo5g002430.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.11e-136MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]