PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586346.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 269aa    MW: 30841.8 Da    PI: 4.8639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-1162105654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      + Er+RR+++N++++ Lr+++P+ +      Kl+Ka++ +  ++Y+++L
  XP_013586346.1  62 VASERKRREKLNQRLFALRSVVPNiS------KLDKASVIRDSINYLQDL 105
                     578*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1256105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-1758125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.46E-1159105No hitNo description
PfamPF000104.0E-961105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1362111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1562124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEDLDDEYKN YWETTMFFQN QELEFDSYKL KFSWPLEEAF SGSGESSSPD GAATSPVTSK  60
NVASERKRRE KLNQRLFALR SVVPNISKLD KASVIRDSIN YLQDLIDQEK KLEAEIRELE  120
SRSMLLDNPT RDYDCINNFA GNQQQDLSCI NAMRSKKSRQ MDYNTFGSSI TRVHNHSLIE  180
VLEMTVTCMG EKTVVVCITC SKKRETMLQL CKLLESLNLN ILTTNFSSFS SRLSTTLFLQ  240
ANEEEKSTVE TKIQTAIAAY NDPNCFINF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1261122970Transcription factor MYC2
5gnj_B4e-1261122970Transcription factor MYC2
5gnj_E4e-1261122970Transcription factor MYC2
5gnj_F4e-1261122970Transcription factor MYC2
5gnj_G4e-1261122970Transcription factor MYC2
5gnj_I4e-1261122970Transcription factor MYC2
5gnj_M4e-1261122970Transcription factor MYC2
5gnj_N4e-1261122970Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16469ERKRRE
26570RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586346.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586346.10.0PREDICTED: transcription factor bHLH27-like isoform X1
RefseqXP_013713949.10.0transcription factor bHLH27 isoform X1
SwissprotQ700E31e-129BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A0D3A3990.0A0A0D3A399_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EU130.0A0A3P6EU13_BRAOL; Uncharacterized protein
STRINGBo1g014720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-119bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]