PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586642.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 721aa    MW: 79678.9 Da    PI: 5.6203
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586642.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1967123157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  XP_013586642.1  67 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 123
                     688999************************************************995 PP
2START209.51.3e-652544682206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                     la +a++el+++ +++ep+W++++   +++e+ ++f+++ +     +++ea+r+s+vv+m++++ ve+l+d++ qW+  +a    +a  l+v+s+
  XP_013586642.1 254 LAVAAMEELMRMTQVDEPLWKSLV--VDEEEYARTFPRGIGpkpagFRTEASRESVVVIMNHVNIVEILMDVN-QWSVVFAgmvsRAVSLAVLST 345
                     6789********************..************999********************************.**********9999******* PP

                     T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
           START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                     g      galq+m+ae+q+++plvp R+ +f+Ry++q+ +g+w++vd+S+ds q++p     vR++++ Sg+li++++ng+skvtwvehv++++r
  XP_013586642.1 346 GvagnynGALQVMSAEFQVPTPLVPtRETYFARYCKQQADGSWAVVDISLDSLQPNPP----VRCRRRASGCLIQEMPNGYSKVTWVEHVEVDDR 436
                     *********************************************************8....********************************* PP

                     XX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 176 lp.hwllrslvksglaegaktwvatlqrqcek 206
                        h l++++v++g+a+gak+wva l+rqce+
  XP_013586642.1 437 GGvHDLYKHMVSTGHAFGAKRWVAILDRQCER 468
                     988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-2245122IPR009057Homeodomain-like
SuperFamilySSF466894.18E-1959130IPR009057Homeodomain-like
PROSITE profilePS5007116.47164124IPR001356Homeobox domain
SMARTSM003891.6E-1865128IPR001356Homeobox domain
CDDcd000867.96E-1967125No hitNo description
PfamPF000463.2E-1767122IPR001356Homeobox domain
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PROSITE profilePS5084841.658244471IPR002913START domain
SuperFamilySSF559616.41E-32245470No hitNo description
CDDcd088751.83E-118248467No hitNo description
SMARTSM002343.5E-59253468IPR002913START domain
PfamPF018522.0E-58254468IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-4348432IPR023393START-like domain
SuperFamilySSF559619.73E-27487713No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MFEPNMFLAD MNNEDSNNHN YNHEDNNNNN ERFLRDEEFD SANTKSGSEN QEGGSGNDQD  60
NHHPNKKKRY HRHTQLQIQE MEAFFKECPH PDDKQRKQLS RELGLEPLQV KFWFQNKRTQ  120
MKNHHERHEN SHLRAENEKL RGDNIRYREA LANASCPNCG GPTVIGEMSF DEHQLRLENA  180
RLREEIDRIS AIAAKYVGKP VSSYPLMSPP PLPPRPLELA MGNFGGDVYG NNPTDLFKSI  240
TAPTESDKPL IIDLAVAAME ELMRMTQVDE PLWKSLVVDE EEYARTFPRG IGPKPAGFRT  300
EASRESVVVI MNHVNIVEIL MDVNQWSVVF AGMVSRAVSL AVLSTGVAGN YNGALQVMSA  360
EFQVPTPLVP TRETYFARYC KQQADGSWAV VDISLDSLQP NPPVRCRRRA SGCLIQEMPN  420
GYSKVTWVEH VEVDDRGGVH DLYKHMVSTG HAFGAKRWVA ILDRQCERLA SVMATNISPG  480
EVGVITNQEG RRSMLKLAER MVISFCAGVS ASTAHTWTTL SGTGAEDVRV MTRKSVDDPG  540
RPPGIVLSAA TSFWIPVPPK RVFDFLRDEN SRNEWDILSN GGVVQEMAHI ANGRDTGNCV  600
SLLRVNSANS SQSNMLILQE SCTDPTASFV IYAPVDIVAM NIVLNGGDPD YVALLPSGFA  660
ILPDGNANGG GEGGSLLTVA FQILVDSVPT AKLSLGSVAT VNNLIACTVE RIKAAMSCET  720
A
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586642.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586641.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D3C7R60.0A0A0D3C7R6_BRAOL; Uncharacterized protein
STRINGBo5g005350.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2