PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586951.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 248aa    MW: 27576.1 Da    PI: 5.0768
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586951.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.82e-1170112248
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                     +  GVr +  +g+W+AeIr p +   +++++lg++ t eeA ka+  
  XP_013586951.1  70 KPVGVRLRQ-SGKWAAEIRNPLT---KTKVWLGTYATLEEAGKAYAD 112
                     678***999.7*********743...4*****************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-770110IPR001471AP2/ERF domain
PROSITE profilePS5103215.35670127IPR001471AP2/ERF domain
SMARTSM003805.2E-1070133IPR001471AP2/ERF domain
CDDcd000181.12E-1572110No hitNo description
SuperFamilySSF541714.18E-1272121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-1673125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MKKSVRGRKV RIIVSDPYAT DDSSSDEWFE CKPPKVKRIV HEINLPFQLS ESSQYHKSCR  60
RKAASMQLNK PVGVRLRQSG KWAAEIRNPL TKTKVWLGTY ATLEEAGKAY ADKKVEFDAS  120
VASANSQCLR SAASKEKVCL SKDVAASGDL TKEGFDLSQL EIPDLSFLAA EEKSGAKAAG  180
EIDFDCFFKD EDYDHLFDDF SVVDNVNNIS LPSELPDCDF TDVELEHGDM KFAFADQLAH  240
PPLNIACP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586951.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586951.10.0PREDICTED: ethylene-responsive transcription factor ERF116
RefseqXP_013586952.10.0PREDICTED: ethylene-responsive transcription factor ERF116
RefseqXP_013697768.10.0ethylene-responsive transcription factor ERF116
RefseqXP_013697769.10.0ethylene-responsive transcription factor ERF116
RefseqXP_013697770.10.0ethylene-responsive transcription factor ERF116
SwissprotQ8GW174e-64EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLA0A0D3CD680.0A0A0D3CD68_BRAOL; Uncharacterized protein
TrEMBLA0A3N6RPG10.0A0A3N6RPG1_BRACR; Uncharacterized protein
STRINGBo5g043190.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.22e-60ERF family protein