PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013587010.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 163aa MW: 18060.7 Da PI: 8.1233

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013587010.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143	9.2e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dCv+apyfpa++p kfa+vhk+FGasnv+k+l+ l+e+ r+da++s+vyeA+ar++dPvyG+vg+i++lq+qle+l+++la XP_013587010.1 13 PCAACKLLRRKCVEDCVFAPYFPAKEPYKFAIVHKIFGASNVSKMLQVLSENYRSDAVNSIVYEANARVQDPVYGCVGIISSLQRQLETLQTQLA 107 7********************************************************************************************** PP DUF260 96 llkee 100 +++e XP_013587010.1 108 FAQAE 112 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.436	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-43	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MRRNGHSHGA VSPCAACKLL RRKCVEDCVF APYFPAKEPY KFAIVHKIFG ASNVSKMLQV 60 LSENYRSDAV NSIVYEANAR VQDPVYGCVG IISSLQRQLE TLQTQLAFAQ AELVHMKTLH 120 RIDTKPPPYM ASGISFPANK DLSNDVDMAF AYENGAGESL WSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-44	9	114	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-44	9	114	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. At the bases of lateral organs formed from vegetative, inflorescence, and floral meristems. {ECO:0000269\|PubMed:12068116, ECO:0000269\|PubMed:17485849}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013587010.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin. {ECO:0000269\|PubMed:17485849}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013587010.1	1e-121	PREDICTED: LOB domain-containing protein 3-like
Swissprot	Q9SA51	2e-96	LBD3_ARATH; LOB domain-containing protein 3
TrEMBL	A0A0D3CAT4	1e-120	A0A0D3CAT4_BRAOL; Uncharacterized protein
STRING	Bo5g021980.1	1e-121	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	2e-88	ASYMMETRIC LEAVES 2-like 9

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]