PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013587028.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

VOZ

Protein Properties

Length: 477aa MW: 53265.8 Da PI: 5.5288

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013587028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	438.5	8.9e-135	199	416	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 pppsaflgpkcalwdc+rpaqg++w+qdycssfha+la+neg+pg++pv+rp+gi+lkdgllfaalsak+ gk+vgipecegaatakspwna+el XP_013587028.1 199 PPPSAFLGPKCALWDCPRPAQGFDWFQDYCSSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPWNAPEL 293 89******************************************************************************************* PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelkl. 189 fdl++le+et+rewlffdkprrafesgnrkqrslpdy+grgwhesrkq+m efgglkrsyymdpqp+++fewhlyeyein++da+alyrlelkl XP_013587028.1 294 FDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMSEFGGLKRSYYMDPQPLHHFEWHLYEYEINKCDACALYRLELKLv 388 *****************************************************************************************73 PP VOZ 190 vdekksakgkvskdsladlqkklgrlta 217 vd+kk++kgk+s+ds+adlqk++grlta XP_013587028.1 389 VDGKKNSKGKLSTDSVADLQKQMGRLTA 416 69**********************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MTGKRSKITC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRGVDVTL LEEQVNQMLR 60 EWKSELNEPS PASSLQQEQG GTLGSFSTDI CRLLQLCDEE DDATSKLAPP KPEPTDQNLE 120 AGKAAVFQRE KSEHGFSLAD DHGKDPCLVV GNNFDGTAHL DYNQYDLQQE FEPNFNGGFN 180 DCPTYGPLHI SAFIPTICPP PSAFLGPKCA LWDCPRPAQG FDWFQDYCSS FHAALAFNEG 240 PPGMNPVVRP GGIGLKDGLL FAALSAKAGG KDVGIPECEG AATAKSPWNA PELFDLTVLE 300 SETLREWLFF DKPRRAFESG NRKQRSLPDY NGRGWHESRK QIMSEFGGLK RSYYMDPQPL 360 HHFEWHLYEY EINKCDACAL YRLELKLVVD GKKNSKGKLS TDSVADLQKQ MGRLTAEFPQ 420 ENVNNKRCIK GRPKVNTKVA ATTTGNVQNT VVEQGNEYGV GEEFNYLVGN LTDYYLP

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MTGKRSKITC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRGVDVTL LEEQVNQMLR  60
EWKSELNEPS PASSLQQEQG GTLGSFSTDI CRLLQLCDEE DDATSKLAPP KPEPTDQNLE  120
AGKAAVFQRE KSEHGFSLAD DHGKDPCLVV GNNFDGTAHL DYNQYDLQQE FEPNFNGGFN  180
DCPTYGPLHI SAFIPTICPP PSAFLGPKCA LWDCPRPAQG FDWFQDYCSS FHAALAFNEG  240
PPGMNPVVRP GGIGLKDGLL FAALSAKAGG KDVGIPECEG AATAKSPWNA PELFDLTVLE  300
SETLREWLFF DKPRRAFESG NRKQRSLPDY NGRGWHESRK QIMSEFGGLK RSYYMDPQPL  360
HHFEWHLYEY EINKCDACAL YRLELKLVVD GKKNSKGKLS TDSVADLQKQ MGRLTAEFPQ  420
ENVNNKRCIK GRPKVNTKVA ATTTGNVQNT VVEQGNEYGV GEEFNYLVGN LTDYYLP

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013587028.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB125256	0.0	AB125256.1 Arabidopsis thaliana AtVOZ1 mRNA for transcription factor AtVOZ1, complete cds.
GenBank	AK227014	0.0	AK227014.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-45-I22.
GenBank	AK317006	0.0	AK317006.2 Arabidopsis thaliana AT1G28520 mRNA, partial cds, clone: RAFL16-07-G16.
GenBank	BT020261	0.0	BT020261.1 Arabidopsis thaliana At1g28520 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013587028.1	0.0	PREDICTED: transcription factor VOZ1 isoform X3
Refseq	XP_013697084.1	0.0	transcription factor VOZ1 isoform X3
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A078H000	0.0	A0A078H000_BRANA; BnaC05g21930D protein
TrEMBL	A0A0D3CEB4	0.0	A0A0D3CEB4_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EHD2	0.0	A0A3P6EHD2_BRAOL; Uncharacterized protein
STRING	Bo5g057050.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]