PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587299.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 302aa    MW: 33404.6 Da    PI: 8.1318
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.64.3e-33167223158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+Il+RRq+Rak+e e kl +ksrkpylheSRh+hA+rRpRg+gGrF
  XP_013587299.1 167 QEPVYVNAKQYQAILRRRQARAKAELEMKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 223
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.2E-36165226IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.414166226IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.2E-29168223IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-24169191IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860171191IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.6E-24200223IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MESEDMHSKK PDGGNQIVSE VVHHHTSSSS INSLNPWQRA AAACNASSLV EEAGDKSIAL  60
ENQNNWESTN GSKSPSNRDD NGNKESPQVT TSPQESAGDY SEKSQELVHV GVTGPPHPQL  120
VSHTGWASSN PYQDPYYAGM MGAYPMAYVP YGGMPHSRMP LPPEVAQEPV YVNAKQYQAI  180
LRRRQARAKA ELEMKLIKSR KPYLHESRHQ HAMRRPRGTG GRFAKKTNTE ASQPKPGEKN  240
NATQSPTSSH SDQPEAWNDE CRKQSEEMQS SASKRREEAD CSGQQWNSIS SNHTSQARLA  300
IK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19167223258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587299.10.0PREDICTED: nuclear transcription factor Y subunit A-9 isoform X2
RefseqXP_013697366.10.0nuclear transcription factor Y subunit A-9-like isoform X2
SwissprotQ945M91e-145NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A0D3CHV50.0A0A0D3CHV5_BRAOL; Uncharacterized protein
STRINGBo5g105110.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-142nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]