PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587529.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 538aa    MW: 59492.6 Da    PI: 6.6775
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.9e-13383428454
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  XP_013587529.1 383 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 428
                     799***********************66......***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.4E-499199IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.83E-18379448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.326379428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.16E-14382433No hitNo description
Gene3DG3DSA:4.10.280.109.0E-18383442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10383428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16385434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MTVGSDDNLQ NKLSDLVETP NSSNFSWNYA IFWQVSRSKS GDLVLCWGDG SCREPKDGER  60
SEMMRMLSMG REEETHQTLR KRVLQKLHAL FGGLDDEEDS CALVLDRVTD TEMFLLASMY  120
FSFPRGQGGP GKCFHSAQPV WLSDLVNSGS DYCVRSFLAK SAGIQTVVLV PTDIGVVELG  180
STSCLPHSDE SLSSIRLSFS SPPPPPPPPV RLPVVVANHN DDNSSSKIFG KDLHSSSGFH  240
HQHQQQHRQF REKLTVRKMD DNRVPKRLLD GNNNRFMFSN PITTNNNTLM STSTWIPPEA  300
PSREDFKFLP LQQSSSSHRL LPPAQIQIDF SGASSRPSDN NSDGGGGGAD WADLVGGADE  360
SGGDNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD  420
AVSYINELYA KLKVMEAERE KLGYSSNPLI CLEPPAVNVQ TAGEDVAVTV NCALDSHPAS  480
RIFHAFEEAK VEVINSKLEV PQDVVLHTFV IKSEEVTKEK LVSALSREQS SSRTSSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-26377442265Transcription factor MYC2
5gnj_B6e-26377442265Transcription factor MYC2
5gnj_E6e-26377442265Transcription factor MYC2
5gnj_F6e-26377442265Transcription factor MYC2
5gnj_G6e-26377442265Transcription factor MYC2
5gnj_I6e-26377442265Transcription factor MYC2
5gnj_M6e-26377442265Transcription factor MYC2
5gnj_N6e-26377442265Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587529.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587528.10.0PREDICTED: transcription factor bHLH13 isoform X1
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A0D3C6Z00.0A0A0D3C6Z0_BRAOL; Uncharacterized protein
STRINGBo5g002590.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  2. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]