PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013587860.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 481aa MW: 51716 Da PI: 5.198

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013587860.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6e-09	305	353	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_013587860.1 305 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 353 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-17	300	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.59E-11	300	357	No hit	No description
PROSITE profile	PS50888	15.478	302	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.2E-17	303	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-6	305	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	308	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MDVSEKDELR NGNDTTVNYV ESANNPPPDW RVSGSNPVSD SYPTENLISS SQMMETLWYD 60 PANVQAVGYG GFNGGGNPSS SSSFRANIDR SLETGWSLPN LLPPKGGNGM FLPNASSFLP 120 PSMAQFPADS GFIERAARFS LVSGGSFSDM MNQQQPLGNP ESVGLFLQGQ CPSSEVNVVG 180 VAHNDASAAM KETNKQNVPG SGNVSEDTQS SGGNGQKGGE TSSKGFDSKK RKRNKQNAEA 240 DQSNRSQQSE EEPDNNGGGD KKRNDEQSPN SQGNKTNSGK QQGKQASDPK DGYIHVRARR 300 GQATNSHSLA ERVRREKISE RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS 360 MKLATVNPQM DFNLEGLLAK DALQLRAGTS SATPFPPNMP MVYPPLPHGF MQQTLSCMGR 420 TVSSPLSPPI NGGYKRQEAN GWEGDLQNVI QINYGAGDVP PDSQAAATDA SLPSSNMKVE 480 P

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MDVSEKDELR NGNDTTVNYV ESANNPPPDW RVSGSNPVSD SYPTENLISS SQMMETLWYD  60
PANVQAVGYG GFNGGGNPSS SSSFRANIDR SLETGWSLPN LLPPKGGNGM FLPNASSFLP  120
PSMAQFPADS GFIERAARFS LVSGGSFSDM MNQQQPLGNP ESVGLFLQGQ CPSSEVNVVG  180
VAHNDASAAM KETNKQNVPG SGNVSEDTQS SGGNGQKGGE TSSKGFDSKK RKRNKQNAEA  240
DQSNRSQQSE EEPDNNGGGD KKRNDEQSPN SQGNKTNSGK QQGKQASDPK DGYIHVRARR  300
GQATNSHSLA ERVRREKISE RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS  360
MKLATVNPQM DFNLEGLLAK DALQLRAGTS SATPFPPNMP MVYPPLPHGF MQQTLSCMGR  420
TVSSPLSPPI NGGYKRQEAN GWEGDLQNVI QINYGAGDVP PDSQAAATDA SLPSSNMKVE  480
P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	235	KKRKRNKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013587860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013587860.1	0.0	PREDICTED: transcription factor bHLH49-like isoform X1
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A0D3CZ46	0.0	A0A0D3CZ46_BRAOL; Uncharacterized protein
STRING	Bo6g108460.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]