PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013587926.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 603aa    MW: 66585.8 Da    PI: 5.3229
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013587926.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.91.1e-972346022374
            GRAS   2 velLlecAeavssgdle.....laqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                     +e+L+++Ae + +++++     laq +Larl+++ s + +      p+qR+a+++teAL + +++         +p   s++n++ ++aa+++fs
  XP_013587926.1 234 IEQLFNAAELIGNNNNNgdhtaLAQGILARLNHHLSYSNNnnnknpPFQRAASHITEALLSLINN--------ASPPLISPENMILRIAAYRTFS 320
                     6899******9997766666669**********95544433467779*****************9........4444455678************ PP

            GRAS  86 evsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                     e+sP+l+f ++taNq Ile+ + e   +r+HiiDfd+++G+QW +L+q+LasR+ + + sl+iT++++p s+  ++ el+ t+e+L++fA e+++
  XP_013587926.1 321 ETSPFLQFVNFTANQSILESCNDElgfDRIHIIDFDVGYGGQWSSLMQELASRRrNRASSLKITVFAPPPSTvsDEFELRFTEENLRSFAGEVKI 415
                     **********************99999************************99857778*********9988899******************** PP

            GRAS 175 pfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                     pfe+++l  + l +  ++  ++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++al+y+++l
  XP_013587926.1 416 PFEIELLSLELLLNPAYWPVSLRSleKEAVAVNLPVNSVVSG--------YLPFILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHALQYHTTL 502
                     ******97777777788877777766*********9655554........4566***************************************** PP

            GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                     ++sl+a+   +s+e+ +vEr++++++i++++++++++     e+ + Wr+ ++++GF+p++ls++a++qa++ll++ +++g++ve+++gslv++W
  XP_013587926.1 503 LESLDAN---QSQEDESVERFWVQPSIEKLLMKRHRW----IERSQPWRSLFTQCGFSPASLSQTAEAQAECLLQRSPVRGFHVEKRHGSLVMCW 590
                     *******...8**************************....88888************************************************* PP

            GRAS 363 kdrpLvsvSaWr 374
                     ++++Lv+vSaW+
  XP_013587926.1 591 QRKELVTVSAWK 602
                     ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.312207582IPR005202Transcription factor GRAS
PfamPF035143.7E-95234602IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MPLSFERFQG EGVFGVVSSL YSDPQKIWFN QDKTGAEQDL GYVVGGVLPE PTSVLDALRS  60
PSPLASHSST TTTTTTTTMT LSSSHGGGTV TATATAVDDK CSQIGLDDLD GGQEQSILRL  120
IMDPGSGFGV FDPGFGFGSG SVPVNPLLSS SFPYQEELTF SNPPSSPPAK RFNSGSHQPV  180
FPFPDPGHDP FLVRRQQQFQ FPFQFHQQQL PSSSSSLAPV PPPGTAGDDQ TVIIEQLFNA  240
AELIGNNNNN GDHTALAQGI LARLNHHLSY SNNNNNKNPP FQRAASHITE ALLSLINNAS  300
PPLISPENMI LRIAAYRTFS ETSPFLQFVN FTANQSILES CNDELGFDRI HIIDFDVGYG  360
GQWSSLMQEL ASRRRNRASS LKITVFAPPP STVSDEFELR FTEENLRSFA GEVKIPFEIE  420
LLSLELLLNP AYWPVSLRSL EKEAVAVNLP VNSVVSGYLP FILRFLKQIS PNVVVCSDRG  480
CDRNDAPFPN AVIHALQYHT TLLESLDANQ SQEDESVERF WVQPSIEKLL MKRHRWIERS  540
QPWRSLFTQC GFSPASLSQT AEAQAECLLQ RSPVRGFHVE KRHGSLVMCW QRKELVTVSA  600
WKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2927560234375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013587926.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894450.0AC189445.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070L01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587926.10.0PREDICTED: scarecrow-like protein 27 isoform X1
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A0D3CUG80.0A0A0D3CUG8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H1120.0A0A3P6H112_BRAOL; Uncharacterized protein
STRINGBo6g074360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]