PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588473.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 168aa    MW: 19157.8 Da    PI: 9.3311
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588473.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-0592114123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ Cg++F +   L  H+r+H
  XP_013588473.1  92 HKCSTCGQMFGTGQALGGHMRKH 114
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.4E-43572IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.57E-54374No hitNo description
PROSITE profilePS501579.9724875IPR007087Zinc finger, C2H2
SMARTSM003550.434870IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-104872IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SuperFamilySSF576676.17E-690117No hitNo description
PfamPF139124.7E-1091116IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9392119IPR007087Zinc finger, C2H2
SMARTSM003550.02992114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKRDRSDYEE SITDLDIVKS LMMLSQSFVV KQIEVKQSTR TRTNDNQFEC KTCNRKFDSF  60
QALGGHRASH KKPKLSIDQE QVKHRNNENA AHKCSTCGQM FGTGQALGGH MRKHRESMRT  120
EQPVVSSTVY PVLNRCNSSK CLDLNLTPLE NDLVYAFGKN LADLKFVN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588473.11e-125PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD42e-69ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A0D3CTN61e-123A0A0D3CTN6_BRAOL; Uncharacterized protein
STRINGBo6g067580.11e-124(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-94C2H2 family protein