PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013588514.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 228aa MW: 24845.4 Da PI: 4.4093

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013588514.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00016	188	207	36	55
S-STCHHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksLq 55 + + a++Le+AveY+k Lq XP_013588514.1 188 RQTNTADMLEEAVEYVKALQ 207 44899**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-6	164	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.69E-4	182	211	No hit	No description
SuperFamily	SSF47459	3.4E-5	187	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MQSTHSGGGE GGGGGDVSRG GLSRIRSAPA TWIETLLEDD EEDDLKPNLC LTELLTGNSA 60 GLTSPDTFEF PSSVEQGLYN HQSGFYRQNS SPTDFLSGSG AATDGFLSNF GIPANYDYLP 120 PNVNISPGSK RSREIEAQFS SQMKEEQMSS GVSGMMDMNM DKLLDDSVPF RVRAKRGCAT 180 HPRSIAERQT NTADMLEEAV EYVKALQCQI QELTEQQKRC GCKPKEEQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013588514.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588514.1	1e-170	PREDICTED: transcription factor bHLH80 isoform X2
Swissprot	Q9C8P8	1e-111	BH080_ARATH; Transcription factor bHLH80
TrEMBL	A0A078JAN4	1e-132	A0A078JAN4_BRANA; BnaCnng37600D protein
TrEMBL	A0A3N6QW95	1e-131	A0A3N6QW95_BRACR; Uncharacterized protein
STRING	Bo6g043840.1	1e-131	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	1e-100	bHLH family protein