PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588570.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 239aa    MW: 27705.2 Da    PI: 6.5141
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR194.71.1e-2974161291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++  k  r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+p
  XP_013588570.1  74 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPNKRD--KVIRQRAETRVGCRAMILIRKESSGKWVITKFVKEHNHPLMP 161
                     9******************************************999..999************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-2774161IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MMMGHNEMGE SSGQAMIEQD EENHNEIGEH SGEEMTLEQD EKVDPDSIPL EVADMADEPF  60
VGQEFESEAA AHGFYNAYAT KVGFVIRVSK LSRSRHDGSP IGRQLVCNKE GYRLPNKRDK  120
VIRQRAETRV GCRAMILIRK ESSGKWVITK FVKEHNHPLM PGRVRRGCIY DQYPNEHDKI  180
QELMQQLAAE KKRAATYKRH LEMLFDHIEQ HNEGLTKRIQ HIVDNVRDLE QRDRQQNQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0580890.0AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
GenBankAY1430810.0AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588568.11e-180PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
RefseqXP_013588570.11e-180PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X3
TrEMBLA0A0D3CUT01e-178A0A0D3CUT0_BRAOL; Uncharacterized protein
STRINGBo6g076470.11e-179(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-157FAR1 family protein