PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588587.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 307aa    MW: 33993 Da    PI: 5.72
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588587.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10156203455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+++Er RR++i  ++  L++l+P +    ++   Ka +L + ++Y++sLq
  XP_013588587.1 156 SHSIAERARREKISARMKLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 203
                     8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.50E-10150207No hitNo description
SuperFamilySSF474592.22E-16150219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-17152221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.313152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-7156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-10158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDKETEETLN CLLPFGEGND AMMISDFVGR FCDTQEISLH SISDNFPAYP GHFGHSQVQE  60
SNKSSLLVPG SVSGTGKTRP SSRKRKSIRT GNGKESPASS SLTASNSKMQ EENNAAVAGK  120
QNETEKSENN KDEEKPSEPY KDYIHVRARR GQATDSHSIA ERARREKISA RMKLLQDLVP  180
GCNRITGKAV MLDEIINYVQ SLQRQVQFLS MKLATINPRT EFNAANAMLS AEMLQLGESL  240
SCSESRFPSE YLAVGKNILS EGFVQAEAPA FWENDLQSIV HMGFSDCPQQ SINCSESTVQ  300
MKIEPER
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186SRKRKS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588587.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588587.10.0PREDICTED: transcription factor bHLH77-like isoform X1
RefseqXP_013588588.10.0PREDICTED: transcription factor bHLH77-like isoform X1
RefseqXP_013686850.10.0transcription factor bHLH77
RefseqXP_013686851.10.0transcription factor bHLH77
SwissprotQ9LK481e-124BH077_ARATH; Transcription factor bHLH77
TrEMBLA0A078JCG10.0A0A078JCG1_BRANA; BnaC06g42050D protein
TrEMBLA0A0D3CSN30.0A0A0D3CSN3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FT730.0A0A3P6FT73_BRAOL; Uncharacterized protein
STRINGBo6g056130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-117bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]