PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013588589.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 290aa MW: 32100.9 Da PI: 5.1048

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013588589.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.7	3.2e-06	147	186	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i ++ L++l+P + ++ Ka +L + ++Y++sLq XP_013588589.1 147 RREKISARMKLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 186 *****************....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.179	135	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0031	141	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.85E-7	147	190	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-12	148	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.85E-12	148	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDKETEETLN CLLPFGEGND AMMISDFVGR FCDTQEISLH SISDNFPAYP GHFGHSQVQE 60 SNKSSLLVPG SVSGTGKTRP SSRKRKSIRT GNGKESPASS SLTASNSKMQ EENNAAVAGK 120 QNETEKSENN KDEEKPSEPY KDYIHARREK ISARMKLLQD LVPGCNRITG KAVMLDEIIN 180 YVQSLQRQVQ FLSMKLATIN PRTEFNAANA MLSAEMLQLG ESLSCSESRF PSEYLAVGKN 240 ILSEGFVQAE APAFWENDLQ SIVHMGFSDC PQQSINCSES TVQMKIEPER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	86	SRKRKS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013588589.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588589.1	0.0	PREDICTED: transcription factor bHLH77-like isoform X2
Swissprot	Q9LK48	1e-107	BH077_ARATH; Transcription factor bHLH77
TrEMBL	A0A078JCG1	0.0	A0A078JCG1_BRANA; BnaC06g42050D protein
TrEMBL	A0A0D3CSN3	0.0	A0A0D3CSN3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FT73	0.0	A0A3P6FT73_BRAOL; Uncharacterized protein
STRING	Bo6g056130.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	1e-100	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]