PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588595.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YC
Protein Properties Length: 180aa    MW: 20413.3 Da    PI: 5.5265
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588595.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC159.26.5e-50381411101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql+  w++q   i+++tdfknh++Pla+ikki+kadedv misaeaPv+++kace+filel+lrsw h+eenkrrtl+k+dia+a++rtd+f fl
  XP_013588595.1  38 QLQLLWATQmqeIGQTTDFKNHTVPLAQIKKIMKADEDVCMISAEAPVIFAKACEMFILELALRSWTHTEENKRRTLQKNDIATAISRTDVFGFL 132
                     7999**9996667899******************************************************************************* PP

           NF-YC  93 vdivprdel 101
                     vdi+p+d+l
  XP_013588595.1 133 VDIIPKDDL 141
                     *******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.39E-3017132IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.7E-3453124IPR009072Histone-fold
PfamPF008081.9E-1961123IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEHSEEGQTQ QGVMDYVPPR AYQSGGPSSM AFHHHHQQLQ LLWATQMQEI GQTTDFKNHT  60
VPLAQIKKIM KADEDVCMIS AEAPVIFAKA CEMFILELAL RSWTHTEENK RRTLQKNDIA  120
TAISRTDVFG FLVDIIPKDD LKEEGLGVTK LTMPTVVDSP PYYYLQQQQG VIPWAQGNLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5345138295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116RRTLQKN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588595.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7971420.0KC797142.1 Brassica napus transcription factor subunit NF-YC2 (NF-YC2) gene, complete cds; kinetoplast.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588595.11e-134PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_013588596.11e-134PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG75e-84NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A0D3CR561e-133A0A0D3CR56_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GLV91e-133A0A3P6GLV9_BRAOL; Uncharacterized protein
STRINGBo6g036010.11e-134(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-83nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]