PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588662.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 325aa    MW: 35931.4 Da    PI: 9.5348
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32165220258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ep++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  XP_013588662.1 165 EPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 220
                     8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.8E-38162223IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.681163223IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.9E-27165220IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.6E-24166188IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860168188IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.6E-24197220IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSKKGSTLPY LNTSISWGGM ISTEPLSLKV VDARPEHMHA TKQISFQDQD SPSTQSTCQS  60
YTEVASSGDD KSCRQISFST KSGSEETQRK VSATHTKSCA MTSFPNMHFA PPQMVQTNFS  120
FHYADPHYGG LLATPYLPHA PTCNPQMVGM VPGRVALPVE ITEAEPVFVN AKQYHAIMRR  180
RQQRAKLEAQ NKLIKARKPY LHESRHVHAL KRPRGSGGRF LNTKKLLQES EQAAAKEQEH  240
DKSVQQANLS RFKAHVLQHN KDRGGSTTSG SDVTCVSDGA DIFGHTEFLF SGFPIPTQTN  300
RAILVHGQSN DMHGGGDLHH FSVHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-20165224362NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588662.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895070.0AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBankAC1896070.0AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588662.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
SwissprotQ93ZH21e-174NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A0D3D0790.0A0A0D3D079_BRAOL; Uncharacterized protein
STRINGBo6g116250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-167nuclear factor Y, subunit A3