PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013588663.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 322aa    MW: 35573 Da    PI: 9.5348
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013588663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.1e-32162217258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ep++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  XP_013588663.1 162 EPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 217
                     8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.8E-38159220IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.681160220IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.8E-27162217IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.7E-24163185IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860165185IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.7E-24194217IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSKKGSTLPY LNTSISWGGM ISTEPLSLKV VDARPEHMHA TKQISFQDQD SPSTQSTCQS  60
YTEVASSGDD KSCRQISFST KSGSEETQRK VSATHTKSCA MTSFPNMHFA PPQTNFSFHY  120
ADPHYGGLLA TPYLPHAPTC NPQMVGMVPG RVALPVEITE AEPVFVNAKQ YHAIMRRRQQ  180
RAKLEAQNKL IKARKPYLHE SRHVHALKRP RGSGGRFLNT KKLLQESEQA AAKEQEHDKS  240
VQQANLSRFK AHVLQHNKDR GGSTTSGSDV TCVSDGADIF GHTEFLFSGF PIPTQTNRAI  300
LVHGQSNDMH GGGDLHHFSV HI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-20162221362NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013588663.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588663.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X2
SwissprotQ93ZH21e-176NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A0D3D0790.0A0A0D3D079_BRAOL; Uncharacterized protein
STRINGBo6g116250.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-169nuclear factor Y, subunit A3