PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013588706.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 385aa MW: 42470 Da PI: 9.5417

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013588706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.1	3.9e-38	122	181	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s+ntkfCyynny++sqPryfC++C+ryWt+GG++rnvPvG+grrknk + XP_013588706.1 122 PNKILPCPRCESANTKFCYYNNYNVSQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGW 181 68899****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	119	179	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-31	124	179	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.546	126	180	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	128	164	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MSKSRDIKLF GTTITSLSAV NHYDPSPLSA AHGGSDQSKE ASSSSSSSCS PSIRPDRVLA 60 AKNGQENSRF KDPYTLSHLN EPPKAASEIL PPISSKTNTD QQSELTTTST SAADKPTTLK 120 KPNKILPCPR CESANTKFCY YNNYNVSQPR YFCRNCQRYW TAGGSMRNVP VGSGRRKNKG 180 WPSSNHYLQV TSEDYENNNN LGTILSFGSS ESSVTETGKH QPGDTKITAD SASQEQRTRQ 240 GFLPPQVIFP NNSSPWPYQW SPTGPNANFY PIPFYWGCTV PVWPTSETPP CLGKRSRDQT 300 EGGMKDATTI TRARVVSETI SISEATKSTV WSPKPERKTE GFSLFNGFET KGSNRRSLVP 360 ETSINIQANP AAMSRSMNFR ENMQQ

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MSKSRDIKLF GTTITSLSAV NHYDPSPLSA AHGGSDQSKE ASSSSSSSCS PSIRPDRVLA  60
AKNGQENSRF KDPYTLSHLN EPPKAASEIL PPISSKTNTD QQSELTTTST SAADKPTTLK  120
KPNKILPCPR CESANTKFCY YNNYNVSQPR YFCRNCQRYW TAGGSMRNVP VGSGRRKNKG  180
WPSSNHYLQV TSEDYENNNN LGTILSFGSS ESSVTETGKH QPGDTKITAD SASQEQRTRQ  240
GFLPPQVIFP NNSSPWPYQW SPTGPNANFY PIPFYWGCTV PVWPTSETPP CLGKRSRDQT  300
EGGMKDATTI TRARVVSETI SISEATKSTV WSPKPERKTE GFSLFNGFET KGSNRRSLVP  360
ETSINIQANP AAMSRSMNFR ENMQQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00223	DAP	Transfer from AT1G69570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013588706.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353482	0.0	AK353482.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-45-E10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588706.1	0.0	PREDICTED: cyclic dof factor 5-like
Swissprot	Q9SEZ3	0.0	CDF5_ARATH; Cyclic dof factor 5
TrEMBL	A0A0D3CXN1	0.0	A0A0D3CXN1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6HBJ4	0.0	A0A3P6HBJ4_BRAOL; Uncharacterized protein
STRING	Bo6g095390.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13090	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	0.0	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689] Martín G, et al. Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis. Curr. Biol., 2018. 28(2): p. 311-318.e5 [PMID:29337078]