PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589227.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 365aa    MW: 41995.7 Da    PI: 5.1268
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589227.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.41.6e-2471375128
             NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknra......tksgyWkatgkdke 91 
                     ++F+P d++lv +yL+++v++ k     +i+++++y+ ePw Lp   + + +e+ w++F+ r ++   g+r++r+       + g+W ++g +k+
  XP_013589227.1   7 LKFSPIDQNLVGYYLRNRVDTGKD---GFITDIKLYEDEPWLLPhVkNDQFKENMWFYFVVRTRNL--GSRPKRTvpgrgsSNGGTWTTSGVKKA 96 
                     79*******************994...45***************422333377899****999975..7788886566666779*********** PP

             NAM  92 vlsk..kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                     ++++   + ++g k+ L+++k+   +pkg  t W+m ey l
  XP_013589227.1  97 ITDRnnPKVVIGYKTELAYHKKvkGKPKGDTTGWCMTEYWL 137
                     ***85455669*********7544799************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.7943156IPR003441NAC domain
SuperFamilySSF1019413.01E-274154IPR003441NAC domain
PfamPF023655.0E-146136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAHPRDLKFS PIDQNLVGYY LRNRVDTGKD GFITDIKLYE DEPWLLPHVK NDQFKENMWF  60
YFVVRTRNLG SRPKRTVPGR GSSNGGTWTT SGVKKAITDR NNPKVVIGYK TELAYHKKVK  120
GKPKGDTTGW CMTEYWLASE NDAQFQEVVL CHLRDNNKIV VDQSPERKNG DNDIVPEQPQ  180
QENSDDNNNM FDNNRLLEQR PLIPPFEADD SRFSVQYMTP SGEGQGLGLQ TIMGYSDKAT  240
QEQQHPPISL PPQRQDSGRI NNALVIMEDE CVNQDEIFNL ADLEAGITHP QQQHRQMMMD  300
PYDDISFSRL AMPNNLIYFQ DSWHQDTSPW NNTITTNPRG LIFNTHGYDI QDQTVTKGVN  360
QDSYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589227.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589227.10.0PREDICTED: NAC domain-containing protein 2-like
RefseqXP_013700262.10.0NAC domain-containing protein 2
TrEMBLA0A078JPK10.0A0A078JPK1_BRANA; BnaCnng55820D protein
STRINGBra037078.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145441119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.13e-15NTM1-like 8