PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589237.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 348aa    MW: 39237 Da    PI: 5.8411
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.53e-19695197
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ffk++   ++++s  +v+p ++ +e  ++   +kt  l+ ++g   W+v +   k+++++++++GW++Fv++n+L++gD+++F +dg+++f  +v +
  XP_013589237.1  6 FFKIF--LSHFSSESMVIPASYYDELPLV--LPKTALLQGSDGgCFWKVAM--IKRRNEVYFGQGWSKFVEDNRLRDGDVLTFVYDGSRSF--TVDI 94
                    88888..89999999*********99998..8889****977769******..999999***************************98888..7766 PP

                    E CS
              B3 97 f 97
                    +
  XP_013589237.1 95 Y 95
                    5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-20396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-21496IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-17495No hitNo description
PROSITE profilePS5086313.592498IPR003340B3 DNA binding domain
PfamPF023621.4E-16695IPR003340B3 DNA binding domain
SMARTSM010197.3E-23698IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-8247332IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-6247338IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.044253345IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAPPGFFKIF LSHFSSESMV IPASYYDELP LVLPKTALLQ GSDGGCFWKV AMIKRRNEVY  60
FGQGWSKFVE DNRLRDGDVL TFVYDGSRSF TVDIYGGSRA CKEVRAVAQV ISVDDDDDDD  120
KEDTNPSSEP EMAQTVPNAR NHEESNIIEP EVAQRVPRTR SKGKKRVVVQ DSDDSFISED  180
SDSLSDSSYS PPNDDALLDV TPKVTNSRKK GELRSVNSNV GSTSNSSGSV SRKRQSTIKN  240
PEVYLDDPNN VCFEIILKNR IYELTVPKQI VKDYCLKFQA YVCYIDNHES GTLEARVATW  300
QDQRVSIKKW ERICQRNGLK KGDRLLCELF RKEGLVYAVK IHVVTTAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-1369611100At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589237.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589237.10.0PREDICTED: B3 domain-containing protein At4g34400-like
TrEMBLA0A0D3A3G40.0A0A0D3A3G4_BRAOL; Uncharacterized protein
STRINGBo1g016360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.12e-40B3 family protein