PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589340.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 375aa    MW: 43023.5 Da    PI: 4.7669
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.54.9e-142093122115
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     p+G+rF P+d+ + ++yLk+kv g+++++  +  e+ +i+++ P+dLp      e+ew+ ++++ +    g+ + r    + W   g+d++v+  
  XP_013589340.1 209 PAGCRFLPSDDMMANYYLKNKVLGQPMNARIIPGECpHIFSIPPRDLPGY--PIETEWHCYCRKPN----GQDP-R----SLWTRVGEDTTVFGP 292
                     89***************************666667799**********33..3478******9855....4444.3....47************* PP

             NAM  96 kgelvglkktLvfykgrapk 115
                     +g+ vg+k+t ++ ++++++
  XP_013589340.1 293 QGNGVGIKRTYALTDQEKES 312
                     **********9999655443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011911.7E-1237105IPR005491ENT domain
PROSITE profilePS5113811.40537123IPR005491ENT domain
PfamPF037353.7E-143896IPR005491ENT domain
SuperFamilySSF1586391.96E-93898IPR005491ENT domain
SMARTSM011910.41129203IPR005491ENT domain
PfamPF037354.2E-8132193IPR005491ENT domain
SuperFamilySSF1019412.75E-17207351IPR003441NAC domain
PROSITE profilePS5100520.029208352IPR003441NAC domain
PfamPF023653.6E-7209333IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MADNKDLDSN PPAEDLTIRP LKKIEIAHES ESEPELKKQK LKELQRKAYY SVLHASKAEN  60
SALSHKKSQI IQRLMKEWKI DQETHVSVAE KIDNSEKNVS SSLNSVPESL VVKRIRARLH  120
DEDCLPSNKK MKLEELHKQA YEDVLNAFNA ESPTLSSSRV LIMQDLLEEC NNISHKAHIS  180
AKIYDKVETD PLLVEPFIKT FNTLKKFYPA GCRFLPSDDM MANYYLKNKV LGQPMNARII  240
PGECPHIFSI PPRDLPGYPI ETEWHCYCRK PNGQDPRSLW TRVGEDTTVF GPQGNGVGIK  300
RTYALTDQEK ESDDISLPGE IEPPREEWFI EEISLPPSVA DTDLVFCHVI LNKIEKEEEY  360
EEEEEYDDDE EEGTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589340.10.0PREDICTED: uncharacterized protein LOC106297688
TrEMBLA0A3P6GRE50.0A0A3P6GRE5_BRAOL; Uncharacterized protein
STRINGBra003244.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2032356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.14e-43NAC family protein