PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013589556.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 156aa    MW: 18014.6 Da    PI: 10.0189
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013589556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.82.5e-1222601350
                    HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                    +  R +++lKKA+ELS LC+++v++i +  +g+l ++++
  XP_013589556.1 22 YNARAATVLKKAFELSELCGVDVCIIWYDREGNLvKTWP 60
                    55699************************9998637887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.75E-112197IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.6342255IPR002100Transcription factor, MADS-box
PfamPF003192.3E-82455IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MKMNKLLVRK DTIFKKPSSS LYNARAATVL KKAFELSELC GVDVCIIWYD REGNLVKTWP  60
ENEEAKVRAI AERYSMLSEE ERGKKRNNLS GFLNKKMIRD KKESLRKRDN KFFQFSQKFS  120
QKSETEVVFL RSPPASGPTS APTNVEEEED QAAAVW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013589556.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589556.11e-111PREDICTED: agamous-like MADS-box protein AGL93
SwissprotQ7X9N26e-25AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLA0A3P6BZS04e-70A0A3P6BZS0_BRACM; Uncharacterized protein
TrEMBLM4CIN74e-70M4CIN7_BRARP; Uncharacterized protein
STRINGBra004071.1-P6e-71(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15639717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27090.15e-32AGAMOUS-like 54
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]